rs33789608 SNP Detail

Summary

• ID
  rs33789608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27995714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTAATAGT TTTTATACTT TGACATTCCA
  GGACGAGTGC CCACAGAGAC AGGGAAACAC ATTTGTAGCT TCAGGGGCTG CAGGGATGAA
  GACCGCAGTG CTGAACAAGC AGGGTCTATG GTTTCGGTGC CAAGGGGTAA GGAATAAAAC
  Y
  GCTATATAAG ACTGTGATGT ACCAAACACA CTGAATCCTG TCTTCAGCTC ACTTAGTGCC
  CTTACTTCCA AAAAGACCAC CCTGATGTGG TGACATATAC CCATGggagg atcaggagtt
  cactgccatc cttagctact tggtgagttc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48358806	NES12232873	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T		C	C	C	C		C
ss325349535	CHEV_17_27913685	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33789608					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48358806	NES12232873	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27995714 () rs orientation: forward

Symbol	Name	Function Class
Ilrun	inflammation and lipid regulator with UBA-like and NBR1-like domains	within coordinates
Rr340954	regulatory region 340954	within coordinates
Tssr147065	transcription start site region 147065	1197 bp downstream