rs33789609 SNP Detail

Summary

• ID
  rs33789609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27995582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGACTGA GTTGCTGGAA
  GGTGGTTACT GCACTCCTGA GATCAATCCG CACGTGACTC CTGCTCTTCC CTAGTCAAGG
  GGGGAATCAC CACCATCATG CCGGGACTAA TGACCAAGTA CATCTATCTG TTCACTAGGC
  GGCAGGTACC CAGACTCTGT TACTGCTATG GTTAAGGTAG TTTAGTAATA GTTTTTATAC
  Y
  TTGACATTCC AGGACGAGTG CCCACAGAGA CAGGGAAACA CATTTGTAGC TTCAGGGGCT
  GCAGGGATGA AGACCGCAGT GCTGAACAAG CAGGGTCTAT GGTTTCGGTG CCAAGGGGTA
  AGGAATAAAA CCGCTATATA AGACTGTGAT GTACCAAACA CACTGAATCC TGTCTTCAGC
  TCACTTAGTG CCCTTACTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48358807	NES12232872	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C		C	T	T	T		T
ss325349533	CHEV_17_27913553	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33789609					SNP	T	T	T	T	T	T	T	T	T	C	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48358807	NES12232872	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27995582 () rs orientation: forward

Symbol	Name	Function Class
Ilrun	inflammation and lipid regulator with UBA-like and NBR1-like domains	within coordinates
Rr340954	regulatory region 340954	19 bp proximal
Tssr147065	transcription start site region 147065	1329 bp downstream