rs33789613 SNP Detail

Summary

• ID
  rs33789613
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27995410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCAAACA GATGAGCCGA
  CAATTGAAGT GGGGTTCCTG CACTATGCAG CCTGGGTCAG ACCTGTTTTA ATCACAAAAG
  ACCTAAAATT GGCATTCCCT TAGTGGGTAG AGGGTCACTA CCTTCTCTAA TTCTCTCAAA
  TCCTGTGAGG GTGGTGGTTC ACCTCACAGA TTCAGAGACT GAGTTGCTGG AAGGTGGTTA
  S
  TGCACTCCTG AGATCAATCC GCACGTGACT CCTGCTCTTC CCTAGTCAAG GGGGGAATCA
  CCACCATCAT GCCGGGACTA ATGACCAAGT ACATCTATCT GTTCACTAGG CGGCAGGTAC
  CCAGACTCTG TTACTGCTAT GGTTAAGGTA GTTTAGTAAT AGTTTTTATA CTTTGACATT
  CCAGGACGAG TGCCCACAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48358811	NES12232868	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G		G	C	C	C		C
ss325349529	CHEV_17_27913381	CHEVERUD	SCREENING_POP	f	SNP										G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33789613					SNP	C	C	C	C	C	C	C	C	G	G	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48358811	NES12232868	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27995410 () rs orientation: forward

Symbol	Name	Function Class
Ilrun	inflammation and lipid regulator with UBA-like and NBR1-like domains	within coordinates
Rr340954	regulatory region 340954	191 bp proximal
Tssr147065	transcription start site region 147065	1501 bp downstream