rs33789847 SNP Detail

Summary

• ID
  rs33789847
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51327135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATTAAG CTTCTGAAAA
  TCAACACCAG ATTCATGGTT TTTGCTTTTA ATATTTAACA CATCAGTGTC CAACTAAAAT
  ACACAAAATA TAAGTTGTTT GTTTGAGAAA CTTTTTAAAA AAATTCTTAA AAGGTACAAG
  CAATCAAATC TTCTTTTGGC ATTTTGTAAT CTTGGTTCCT AAAGGTCTCA CTTTAAGTGT
  Y
  ATCTACCAAT TATCTGAGGA AACTGGGAGC CTCTATAATG TCTTTAATGC ATCTTCCTAA
  TGAGCAGGTA CTCAGTGAGG GACCTGGCAC ATGCTCTGTG AATGTTACAT ATGACTAAGT
  GTAAGGCAAC CAATGAATAT ACCACCATAA GATCTACTGT TTCTTCGGCA TACACAGAGG
  TATTGCCGTT AAGGCAATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47345327	NES11063448	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33789847					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47345327	NES11063448	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51327135 () rs orientation: forward

Symbol	Name	Function Class
9330175M20Rik	RIKEN cDNA 9330175M20 gene	within coordinates
Cavin2	caveolae associated 2	1150 bp upstream
Cpgi236	CpG island 236	1547 bp proximal
Rr410688	regulatory region 410688	660 bp proximal
Rr410689	regulatory region 410689	1223 bp proximal
Tssr6622	transcription start site region 6622	1130 bp upstream
Tssr6623	transcription start site region 6623	1269 bp upstream
Tssr6624	transcription start site region 6624	1309 bp upstream
Tssr6625	transcription start site region 6625	1385 bp upstream