rs33789984 SNP Detail

Summary

• ID
  rs33789984
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107734279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTTGGCT ACAGTGGAAA
  ATCCCAACCA GAGGCAAGAA TTCCATTCAA CAAATATTTA TGGAGCCCAC TCAGTGCTAA
  GAGTCACTAA GTCCAGTTCT GTTCTGGTAC TATGGTGCTA CTGGCAAAGA GAACTTGGGA
  CCAGTGGCAC AGACAAGGAA GACCTGCAGG AGCCAGGCTG GGTACCAAGG ACTTGGTCTC
  M
  TGTGGAGGCA AGAAATTCTG GGAACCAGAG TTCAGCGGCA AGTGGACCCA GTCCTCTAGC
  AGAAGAGAAG AAAGAGAAGA GAAGAGAAGA GAAGAGAAGA GAAGAGAAGA GAAGAGAAGA
  GAAGAGAAGA GAAGAGAAGA GAAGAGAAGA GAAGAGAAGA GAAGAGAAGA GAAGAGAAAA
  GGAAAGAAAA GAAAAGAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46859463	NES10721481	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	A	A	A	A	A		A	A	A	A		A
ss320866009	CHEV_3_107629881	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33789984					SNP	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46859463	NES10721481	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107734279 () rs orientation: forward

Symbol	Name	Function Class
Gm36211	predicted gene, 36211	within coordinates
Rr583054	regulatory region 583054	1149 bp distal
Rr583055	regulatory region 583055	1597 bp proximal
Rr583056	regulatory region 583056	1671 bp proximal