rs33789987 SNP Detail

Summary

• ID
  rs33789987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107734296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATCCCAA CCAGAGGCAA
  GAATTCCATT CAACAAATAT TTATGGAGCC CACTCAGTGC TAAGAGTCAC TAAGTCCAGT
  TCTGTTCTGG TACTATGGTG CTACTGGCAA AGAGAACTTG GGACCAGTGG CACAGACAAG
  GAAGACCTGC AGGAGCCAGG CTGGGTACCA AGGACTTGGT CTCATGTGGA GGCAAGAAAT
  Y
  CTGGGAACCA GAGTTCAGCG GCAAGTGGAC CCAGTCCTCT AGCAGAAGAG AAGAAAGAGA
  AGAGAAGAGA AGAGAAGAGA AGAGAAGAGA AGAGAAGAGA AGAGAAGAGA AGAGAAGAGA
  AGAGAAGAGA AGAGAAGAGA AGAGAAGAGA AGAGAAGAGA AAAGGAAAGA AAAGAAAAGA
  GTTGGCTTAA TCACTGGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46859466	NES10721482	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33789987					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46859466	NES10721482	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107734296 () rs orientation: forward

Symbol	Name	Function Class
Gm36211	predicted gene, 36211	within coordinates
Rr583054	regulatory region 583054	1166 bp distal
Rr583055	regulatory region 583055	1580 bp proximal
Rr583056	regulatory region 583056	1654 bp proximal