rs33790277 SNP Detail

Summary

• ID
  rs33790277
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107699259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTACCC ACCGCCAGGC
  TGAAGTTGAG GTTTCTGATC CAGTTCTCAG AGCAAACACA CTCTGTCTTA TTTCCACTGC
  CTTCTCAAGA TGCTGTGCTC TTGTATCTGA GGCCTCTCCA GGCTTTCCTG CCCCACTGTC
  CCTCTTTCTG CATGTCTCCA TCCTCCCTCC TGCCCCTGGT ACTAGGTGTT GGGTTTCAGA
  Y
  TTATTTAGTT CAGACCTATT TAACATACCA AGCCAGATCT GACCTCCAGA GTCTCCCAGC
  ATGCCCCACC CTCTATGCTG GACTTTCCAG CCCGGAGGCT GGGCTTCCTC TTACCCAAAG
  GCTCTTCACT ATAGAATCCA GACATTTGGT TCTCAACCTC TCTTTCTCAC CTTTGTCCCT
  CTCTCCCTCT CCCTACCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46859106	NES10695824	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33790277					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46859106	NES10695824	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107699259 () rs orientation: forward

Symbol	Name	Function Class
Gm40121	predicted gene, 40121	within coordinates
Rr583048	regulatory region 583048	1364 bp distal
Rr583049	regulatory region 583049	1139 bp proximal