rs33790454 SNP Detail

Summary

• ID
  rs33790454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27995325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGTGGAG GGCAAGAGCT
  GACACCCATG GTCATCTGTG GCAAATAGAA AACTGAACCC TTAAAGAGTC CACTTTACTA
  AGAAGGGTCC AAACAGATGA GCCGACAATT GAAGTGGGGT TCCTGCACTA TGCAGCCTGG
  GTCAGACCTG TTTTAATCAC AAAAGACCTA AAATTGGCAT TCCCTTAGTG GGTAGAGGGT
  Y
  ACTACCTTCT CTAATTCTCT CAAATCCTGT GAGGGTGGTG GTTCACCTCA CAGATTCAGA
  GACTGAGTTG CTGGAAGGTG GTTACTGCAC TCCTGAGATC AATCCGCACG TGACTCCTGC
  TCTTCCCTAG TCAAGGGGGG AATCACCACC ATCATGCCGG GACTAATGAC CAAGTACATC
  TATCTGTTCA CTAGGCGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48358812	NES12232867	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33790454					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48358812	NES12232867	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27995325 () rs orientation: forward

Symbol	Name	Function Class
Ilrun	inflammation and lipid regulator with UBA-like and NBR1-like domains	within coordinates
Rr340954	regulatory region 340954	276 bp proximal
Tssr147065	transcription start site region 147065	1586 bp downstream