rs33793142 SNP Detail

Summary

• ID
  rs33793142
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51329733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAACTAG TCTTGTTCTT
  GAAGTCATCT TTTGTCAAAG CAATCTCTAG TTTGTCTCTA GAAAATGATG CCAATAAATG
  TGGGAAGCAA AGTATAGCTC CTTACAGACA TGTTAATTAT GTCCCCTCAT TGCTCAAGCT
  GCAACTACAA AGTGAAATAA AAGAAACGTT ATCAGTGGCT GCCACAAAGA CCAACTTTGA
  R
  TATCTTCCCC TTCAAATAGT TGCCTTACCG TGAAAAGGAC ACTTAATTTT TTTTAATGCA
  TCAATGATGC AATTTATGTA GCAAAGGCTA TCTGGGGACA GGAAGATTGC GTGGAACTGT
  TATTCAGCCA AGTGGTGGGC ATCTGTAAAT CTAAGGGCTG CCCTGCCTAA TGCTGGAAGC
  CCTTCCGTAG ATGGCATTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47345372	NES11063477	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33793142					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47345372	NES11063477	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51329733 () rs orientation: forward

Symbol	Name	Function Class
9330175M20Rik	RIKEN cDNA 9330175M20 gene	within coordinates
Cavin2	caveolae associated 2	within coordinates
Cpgi236	CpG island 236	654 bp distal
Rr410688	regulatory region 410688	1438 bp distal
Rr410689	regulatory region 410689	1354 bp distal
Rr410690	regulatory region 410690	within coordinates
Tssr6622	transcription start site region 6622	1432 bp downstream
Tssr6623	transcription start site region 6623	1295 bp downstream
Tssr6624	transcription start site region 6624	1259 bp downstream
Tssr6625	transcription start site region 6625	1204 bp downstream