rs33794005 SNP Detail

Summary

• ID
  rs33794005
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51329855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTCATTG CTCAAGCTGC
  AACTACAAAG TGAAATAAAA GAAACGTTAT CAGTGGCTGC CACAAAGACC AACTTTGAAT
  ATCTTCCCCT TCAAATAGTT GCCTTACCGT GAAAAGGACA CTTAATTTTT TTTAATGCAT
  CAATGATGCA ATTTATGTAG CAAAGGCTAT CTGGGGACAG GAAGATTGCG TGGAACTGTT
  R
  TTCAGCCAAG TGGTGGGCAT CTGTAAATCT AAGGGCTGCC CTGCCTAATG CTGGAAGCCC
  TTCCGTAGAT GGCATTGAGC CAACCCAGGC CCCAGGAAGC CCTGCCATTC TGCCTCAGGG
  CTGTCTCCTT ATGATCCTGT GAATAGGAGA GACTTTCAAA GCCATGGAGG GAAGAGGTTA
  TAACCAACAG ATTGTGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47345375	NES11063479	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33794005					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47345375	NES11063479	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51329855 () rs orientation: forward

Symbol	Name	Function Class
9330175M20Rik	RIKEN cDNA 9330175M20 gene	within coordinates
Cavin2	caveolae associated 2	within coordinates
Cpgi236	CpG island 236	776 bp distal
Rr410688	regulatory region 410688	1560 bp distal
Rr410689	regulatory region 410689	1476 bp distal
Rr410690	regulatory region 410690	120 bp distal
Tssr6622	transcription start site region 6622	1554 bp downstream
Tssr6623	transcription start site region 6623	1417 bp downstream
Tssr6624	transcription start site region 6624	1381 bp downstream
Tssr6625	transcription start site region 6625	1326 bp downstream