rs33794008 SNP Detail

Summary

• ID
  rs33794008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51330210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAAGCCA TGGAGGGAAG
  AGGTTATAAC CAACAGATTG TGAAAGCATA CAGGGAGAGC CTTCATCTCC CAAGAGACAT
  TTAGAAACTG GAATTTAAAC CGTAGGAGCC TTCTTTTTCC TAATGAATCT ACTCTGCCAA
  GTTAGGGCTC TGGCCTGCCT ATCGCCATAA AAGGAAAGAT TAATCTTGCT GCCTTTGTGT
  Y
  CTCCCCAAAT TGTACTTGAG AGCTAGGAGG TCCAAACAAG TGATGCTCCT GTATCTCACA
  GGCTTTCTGC AGTTGGGAAA CTTTTAGGCT TTTTTTTTTT TTTTTGAAGT TATGAAACAA
  ATGGACTTAA TTGATATCTA CAGAACATTT TATCCTAAAA CAAAAGGATA TACCTTCTTC
  TCAGCCCCAC ATGGTACCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47345378	NES11063481	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33794008					SNP	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47345378	NES11063481	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51330210 () rs orientation: forward

Symbol	Name	Function Class
9330175M20Rik	RIKEN cDNA 9330175M20 gene	within coordinates
Cavin2	caveolae associated 2	within coordinates
Cpgi236	CpG island 236	1131 bp distal
Rr410688	regulatory region 410688	1915 bp distal
Rr410689	regulatory region 410689	1831 bp distal
Rr410690	regulatory region 410690	475 bp distal
Tssr6622	transcription start site region 6622	1909 bp downstream
Tssr6623	transcription start site region 6623	1772 bp downstream
Tssr6624	transcription start site region 6624	1736 bp downstream
Tssr6625	transcription start site region 6625	1681 bp downstream