rs33794211 SNP Detail

Summary

• ID
  rs33794211
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28022777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCGTGGATC CTGTGGGCGA CAGACTGCTG
  CGGCTCACAC AGCATTTGGT GTACTGGAAG ACAAACTGCT AGCCATTGTT TCTAACAAAA
  CAAGAAAACC ATGGCTTAAT CTAAATCTAA TTACGATGCT ACACTTGTCA ACAATGTCGG
  Y
  ACTCAGAGGC AGCAAGCTTA AACTCTACAT ACAGGTTTTT AAAAAAAAAA AAAAGTCTCA
  gggctggaga ccacagtcag tgattaaagc actagtcact gttcagggac ccaaggtcga
  ttcccagtac ccacgtggtg gtttcacaat                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48358667	NES12231202	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T		C	C	C	C		C
ss325349729	CHEV_17_27940748	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33794211					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48358667	NES12231202	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28022777 () rs orientation: forward

Symbol	Name	Function Class
Ilrun	inflammation and lipid regulator with UBA-like and NBR1-like domains	within coordinates
Rr330150	regulatory region 330150	1977 bp distal
Rr330151	regulatory region 330151	24 bp proximal