rs33794776 SNP Detail

Summary

• ID
  rs33794776
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27583586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGTGAGA TGCCACCTTA
  CACTGGGATG GGCAATCTCG AACCTTCTAG AAGGACTGGT GAAGTAGAAG GATCTGAACC
  TCCCTCCTTG GGTGGAATTT GACAAGACCT CTAGGGGAGG GGTCTGGAAG TTCCAGAACA
  GTCACAGGCT GAGGAACCCC ACCCACCCCT TGGTGGACGC CCACAAGAAC GGAAAGCTTA
  M
  GTCTACACGG CTTCCTTTCG ATGCCAGGTG GAACAGCACA GAGGTAAGTG CCCCAGTGTT
  GGATGGATGT GTGTCCAGTG AGCATGTGCA GTGGGGGTGG TGGGGGGAGG GCATGCATCC
  TCATCTCTCT GGGATAGATG CCTAGGAGTG AAATGCTCAT CATATACTGT AGGTAACGAT
  TTTTAAAGTG ACCACACAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48359925	NES12222333	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33794776					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48359925	NES12222333	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27583586 () rs orientation: forward

Symbol	Name	Function Class
Gm49794	predicted gene, 49794	within coordinates
Rr330083	regulatory region 330083	1615 bp proximal
Rr334543	regulatory region 334543	1186 bp distal
Rr337134	regulatory region 337134	1475 bp proximal
Tssr147021	transcription start site region 147021	125 bp upstream