rs33794777 SNP Detail

Summary

• ID
  rs33794777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27583424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACCTCTT AGCAGTGGAC
  TCTGTCTGAT ATCAAGGACT CTGAGGACTC AAAAAAGACA AGAGATAAAT GATTTAAGCA
  GAAATGTCTT CAGCGTCTAA ATGGCAGTCA GATCTGGTCC ACCATGAAAC ATCATTAGCC
  TCCAAGGGAG TGAAATCAAA GCCTCAGTGA GATGCCACCT TACACTGGGA TGGGCAATCT
  Y
  GAACCTTCTA GAAGGACTGG TGAAGTAGAA GGATCTGAAC CTCCCTCCTT GGGTGGAATT
  TGACAAGACC TCTAGGGGAG GGGTCTGGAA GTTCCAGAAC AGTCACAGGC TGAGGAACCC
  CACCCACCCC TTGGTGGACG CCCACAAGAA CGGAAAGCTT ACGTCTACAC GGCTTCCTTT
  CGATGCCAGG TGGAACAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48359926	NES12222332	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33794777					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48359926	NES12222332	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27583424 () rs orientation: forward

Symbol	Name	Function Class
Gm49794	predicted gene, 49794	within coordinates
Rr330083	regulatory region 330083	1777 bp proximal
Rr334543	regulatory region 334543	1024 bp distal
Rr337134	regulatory region 337134	1637 bp proximal
Tssr147021	transcription start site region 147021	20 bp downstream