rs33794779 SNP Detail

Summary

• ID
  rs33794779
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27581728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGTGAG TCATAGCTAT
  ATAGCTTTAT TCATGGAGGA TGATTGTGGG GTGGGGGTGG GGGGGTGGGG GTGGGAGGTG
  GCGTGAAATG TGGACATTTA TTGACATGTT TCCCACGATG AGAGCTGAAC ATAGATAAAG
  AACTATGTGG AGTTGTGGGG GCCATCCTGC CCAACTTGCT GTGAGTCTTA TCATGAGTGC
  R
  GAAACTTGTA GCGGTGTTTG CTACTTTGTG GGTTCTTCCT TTTTCCACCC TTTCAACCCC
  CTAACAGTAT ATAGGGGAGG AAAAAGGCTT GAAAGGAAAG AGTTATCTAC TGGAAGATTT
  CTTTTGAGGA TTAGGAGGGT AGACTGGAGC TCCTTGGGGC AAGTTTAAGC TTCACCATCC
  AGATAGCTGA TTTCTTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48359929	NES12222582	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A		G	G	G	G		A
ss325346728	CHEV_17_27499699	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33794779					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48359929	NES12222582	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27581728 () rs orientation: forward

Symbol	Name	Function Class
Gm49794	predicted gene, 49794	within coordinates
Rr334542	regulatory region 334542	1528 bp distal
Rr334543	regulatory region 334543	273 bp proximal
Rr337133	regulatory region 337133	881 bp distal
Tssr147021	transcription start site region 147021	1716 bp downstream