rs33797935 SNP Detail

Summary

• ID
  rs33797935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:139735423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG CTTTTGAGCT TTCTTTTATC
  R
  TGAAGTTGAA AGCACCCTCC TCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47346735	NES11553485	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G		G	A	G	G		A
ss322470177	CHEV_7_147341409	CHEVERUD	SCREENING_POP	f	SNP									G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33797935					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47346735	NES11553485	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:139735423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19899	CpG island 19899	1777 bp distal
Cpgi19900	CpG island 19900	679 bp distal
Rr657729	regulatory region 657729	143 bp distal
Rr657730	regulatory region 657730	1318 bp proximal
Rr657731	regulatory region 657731	1538 bp proximal
Sprn	shadow of prion protein	851 bp upstream
Tssr75508	transcription start site region 75508	812 bp upstream
Tssr75509	transcription start site region 75509	765 bp upstream