rs33798084 SNP Detail

Summary

• ID
  rs33798084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5773164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTTCAGG AAAAGAAAGA
  AGCTAAACCC CTCCCCAGGT CATGTCTACC TTCCTGCCAA CTACCATTCT CACTCCACTG
  CAACTTTCCT GGTTGAATTT CTCTTCATCA ATAAGACTTT CGAAAAGCAA AATAGAGAGA
  TGCTCAAATG GAGGTAAATG ATTATTGATG TCCTTTCAAT TTTTTAAATG AGGAATTAAT
  Y
  TTGAGAAATG TTTGCTTTCT GAGCACCCCA TTGTATTCCC AGAACTAAAC AATTTGAGAA
  TTTTCTACTG GTTCCAGTCA CAAGAACATA GTATGTCTCA TGATATCTTA TCTTCAAATG
  AACCCCCACA TGTGAGAATA CTTAAGAAAT GTAACACACA AGGAGGAAGA GATACTTGAA
  ATTTTAAAGA TTTATGCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47347135	NES11355700	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	C		T	T	C		T
ss324223057	CHEV_13_5722411	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33798084					SNP	T	T	T	C	T	T	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47347135	NES11355700	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5773164 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	within coordinates
Rr387902	regulatory region 387902	686 bp upstream
Rr474521	regulatory region 474521	323 bp proximal
Rr474522	regulatory region 474522	1257 bp proximal
Tssr121308	transcription start site region 121308	1274 bp downstream