rs33798158 SNP Detail

Summary

• ID
  rs33798158
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:174501540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATAGCCTT TAGATATATC TACTTAAATG ATAGTTTTCA
  GGCGGGGATG TCTTTAACTG AATCTTTCCT TCAATTAGTT AAACTAATAT GGAATGTAGT
  R
  TATAATTTTA ATAAATCTAC AATAGGACAA TTGCAATATA TCCAGACTTG AACAAATATA
  TATGAATATT ATGCAGGTTT TAACATCATA ATATAGTGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49533931	NES12815881	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G		A	A	G	A		G
ss320143639	CHEV_1_176604105	CHEVERUD	SCREENING_POP	f	SNP					A					G
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33798158					SNP	A	A	A	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49533931	NES12815881	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174501540 () rs orientation: forward

Symbol	Name	Function Class
Fmn2	formin 2	Intron
Rr423785	regulatory region 423785	777 bp proximal
Rr423786	regulatory region 423786	850 bp proximal