rs33798162 SNP Detail

Summary

• ID
  rs33798162
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:174500964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGTTTC TTTATTGGTG
  CTGTCATTTT GACTGCACAT CAATTTTTTT CCATCTCTTT CTTTGAGATG TTTAAAAATT
  CTTTTCATAC ACAATACCTA ACGACTGACT GCGTTCTGTC TTTGAATAGT CCATAGTTCC
  CTGTTTCTTG AACATTCGTT TGATTATTAT TTTTATTTAG AATTGGATAA TGCAGCAATG
  S
  AGATCACTCC TGGAGTCCAC TGGTTTGTTT GAAGATAAAA ATAAGACATG GCAGCCAAGG
  AGTTGGCTGA GTGGATAGAC ATATCTATTG TGTAAATGTG AGGACCAGAG TTCTCTAAAA
  CCTGTGTAAA TGCAGGGTGT GCACAGCAAC CACGTGTAAT TTCAGTGCCC AGAGGCAGAG
  AAATAGATTG CTAGAGCTAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49533935	NES12815951	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33798162					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49533935	NES12815951	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174500964 () rs orientation: forward

Symbol	Name	Function Class
Fmn2	formin 2	Intron
Rr423785	regulatory region 423785	1353 bp proximal
Rr423786	regulatory region 423786	1426 bp proximal