rs33798708 SNP Detail

Summary

• ID
  rs33798708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51326959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGACAGC AGGATAAGAG
  CTTCATCGGC AATGACTGGG ATGTCGCCAT GGAGGAGAGG CCCTTGAAAA GCTGATAAAG
  TCCTCCGATA TTTTTGAAAT AATGACACTC TCTGATTTGC CCACAAACGT CAAATGTAAA
  AAAGATGTGC TATCATTATA TCGTATAATT TTGTTAGAAA ATTAAGCTTC TGAAAATCAA
  Y
  ACCAGATTCA TGGTTTTTGC TTTTAATATT TAACACATCA GTGTCCAACT AAAATACACA
  AAATATAAGT TGTTTGTTTG AGAAACTTTT TAAAAAAATT CTTAAAAGGT ACAAGCAATC
  AAATCTTCTT TTGGCATTTT GTAATCTTGG TTCCTAAAGG TCTCACTTTA AGTGTTATCT
  ACCAATTATC TGAGGAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47345318	NES11063440	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33798708					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47345318	NES11063440	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51326959 () rs orientation: forward

Symbol	Name	Function Class
9330175M20Rik	RIKEN cDNA 9330175M20 gene	within coordinates
Cavin2	caveolae associated 2	1326 bp upstream
Cpgi236	CpG island 236	1723 bp proximal
Rr410688	regulatory region 410688	836 bp proximal
Rr410689	regulatory region 410689	1399 bp proximal
Tssr6622	transcription start site region 6622	1306 bp upstream
Tssr6623	transcription start site region 6623	1445 bp upstream
Tssr6624	transcription start site region 6624	1485 bp upstream
Tssr6625	transcription start site region 6625	1561 bp upstream