rs33798711 SNP Detail

Summary

• ID
  rs33798711
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51327051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAAATAA TGACACTCTC
  TGATTTGCCC ACAAACGTCA AATGTAAAAA AGATGTGCTA TCATTATATC GTATAATTTT
  GTTAGAAAAT TAAGCTTCTG AAAATCAACA CCAGATTCAT GGTTTTTGCT TTTAATATTT
  AACACATCAG TGTCCAACTA AAATACACAA AATATAAGTT GTTTGTTTGA GAAACTTTTT
  W
  AAAAAATTCT TAAAAGGTAC AAGCAATCAA ATCTTCTTTT GGCATTTTGT AATCTTGGTT
  CCTAAAGGTC TCACTTTAAG TGTTATCTAC CAATTATCTG AGGAAACTGG GAGCCTCTAT
  AATGTCTTTA ATGCATCTTC CTAATGAGCA GGTACTCAGT GAGGGACCTG GCACATGCTC
  TGTGAATGTT ACATATGACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47345321	NES11063444	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33798711					SNP	A	A	T	A	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47345321	NES11063444	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51327051 () rs orientation: forward

Symbol	Name	Function Class
9330175M20Rik	RIKEN cDNA 9330175M20 gene	within coordinates
Cavin2	caveolae associated 2	1234 bp upstream
Cpgi236	CpG island 236	1631 bp proximal
Rr410688	regulatory region 410688	744 bp proximal
Rr410689	regulatory region 410689	1307 bp proximal
Tssr6622	transcription start site region 6622	1214 bp upstream
Tssr6623	transcription start site region 6623	1353 bp upstream
Tssr6624	transcription start site region 6624	1393 bp upstream
Tssr6625	transcription start site region 6625	1469 bp upstream