rs33799141 SNP Detail

Summary

• ID
  rs33799141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:174574680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATTTTGA TGTTTAGAAA
  TGAAAATAAG TAATGGATTA TCTAAAACAT TTAATACCCT CCACACCACC CCAGAATGTT
  TCTTTATGCC ATTTCACCAG CATTACTACA TAGGCTGGAC AGTGACCAAC AGTAGCTCTG
  TGAAGAACAA CAACATAGCC CTTCTAGGGG CCTTTGATTT TGAGCCAGGC CTGTTACTTT
  Y
  CATCGCTCTA TACCTTAAAC TAGGATTAAA ACTGTCAGTA TTTACTGTTG TTAAAGAAGA
  CTGAGTGGCA TGGTCCCTGA CAGGTGCTTT AGTACTTGGT AAGTGATTGA TAGATGCTTC
  TGTGTTACTG TTATATTATT ATCATCATTA GAGACTAAAA ACCATATAGT AGTAGAGCCT
  GGGAGGTAGG TCACTCATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49533649	NES12813157	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33799141					SNP	C	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49533649	NES12813157	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174574680 () rs orientation: forward

Symbol	Name	Function Class
Fmn2	formin 2	within coordinates
Gm51689	predicted gene, 51689	within coordinates