rs33799825 SNP Detail

Summary

• ID
  rs33799825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5775211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGAAACC ATAAAGATCA
  ATTTACCCCA GCCAATTTCA CATTAAAATG AAATACATAG CCTGTTTTTA TTTGGCTTTT
  AGGCCATGCC ACTGAGAAAA TCTTATGCAT TCACAATATT ATAGTTTAAT ATATGACAAT
  AAGAGTGTAT TTCTGAATAA TGTCATGTAT TTTATATACA CAGTGTTTTG CAGATGAAGA
  Y
  GTTACAAGTT TATTTGTAAG ATTCATTTCA AAAGATACAT ATTAATACAT ATTTTTCTCT
  TTCTAACACC TCAGCATAGA GCTATGGCCA GATATAACAG CATGAATATG TAATCCTAGC
  AGTAACGAGT CTGTAATTAT TTGACCATAA ACAAGAGCCA AGAACCTAAA TACCAATAAT
  AACTTTGGGA CTTCAAAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47347156	NES11362380	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C		C	T	C		T
ss324223072	CHEV_13_5724458	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33799825					SNP	T	T	T	T	T	T	T	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47347156	NES11362380	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5775211 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	567 bp upstream
Gm57599	predicted gene, 57599	260 bp upstream
Rr387902	regulatory region 387902	505 bp downstream
Rr474521	regulatory region 474521	1703 bp distal
Rr474522	regulatory region 474522	499 bp distal
Tssr121308	transcription start site region 121308	754 bp upstream