rs33800607 SNP Detail

Summary

• ID
  rs33800607
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5775881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGCCACA CTGTGCAGGT
  GAGAAAAATG CCCATGGACC TGCCCTCCTA CCCACAGGGC ACTGATTTTT TTTCATGAGT
  AATTTTGTCT TTTTCTCATG CATGAGCTGG GTCCTGTTAG AGGCGCAATC CTATCTTGAT
  GGAATCTAGT TTGTCTGCTT TGTTTCTCTG CTTGAGGAGA AAAAGGAACA CAGTGAGGAG
  R
  GTAAAGTCAA TGGAGTTAGA GGGGGCATGC TCCTAAAGGC TAACACTTTG AAGAAGCACA
  GGAAAGTGAA TTTCTTGAAG AAAGTTGGTT GACAATTTCT CATTAATAGC TAAAGATCAA
  AAATAGACTA TAAGAAGGAA AACATGAAGA AAAGAGAGAC TAAGTATTTA CTTGAGTATA
  GTACAACTTA TCAGAGAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss47347168	NES11362386	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs33800607					SNP	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47347168	NES11362386	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5775881 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	1237 bp upstream
Gm57599	predicted gene, 57599	268 bp downstream
Rr387902	regulatory region 387902	1175 bp downstream
Rr474522	regulatory region 474522	1169 bp distal
Tssr121308	transcription start site region 121308	1424 bp upstream