rs33800610 SNP Detail

Summary

• ID
  rs33800610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5776058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAAGGA ACACAGTGAG
  GAGGGTAAAG TCAATGGAGT TAGAGGGGGC ATGCTCCTAA AGGCTAACAC TTTGAAGAAG
  CACAGGAAAG TGAATTTCTT GAAGAAAGTT GGTTGACAAT TTCTCATTAA TAGCTAAAGA
  TCAAAAATAG ACTATAAGAA GGAAAACATG AAGAAAAGAG AGACTAAGTA TTTACTTGAG
  Y
  ATAGTACAAC TTATCAGAGA ATAACTGTAG GCCTGAGTCC AATGTGCTAA GTAGAAGGAA
  TATACTCCCT CAGTTACTTC CTTTCTATAC GTTCCTCAAG CATCCGCTAG GGATGACTTT
  GTTTGCTCTT CTGGGTCTTG GCCAATGCAT TCAACTTCCC TTTTTCCTAT TTAGATACAA
  GTAAAAGAGT CTGCAATGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss47347171	NES11362387	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs33800610					SNP	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47347171	NES11362387	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5776058 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	1414 bp upstream
Gm57599	predicted gene, 57599	445 bp downstream
Rr387902	regulatory region 387902	1352 bp downstream
Rr474522	regulatory region 474522	1346 bp distal
Tssr121308	transcription start site region 121308	1601 bp upstream