rs33800613 SNP Detail

Summary

• ID
  rs33800613
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5776115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGGCTAA CACTTTGAAG
  AAGCACAGGA AAGTGAATTT CTTGAAGAAA GTTGGTTGAC AATTTCTCAT TAATAGCTAA
  AGATCAAAAA TAGACTATAA GAAGGAAAAC ATGAAGAAAA GAGAGACTAA GTATTTACTT
  GAGTATAGTA CAACTTATCA GAGAATAACT GTAGGCCTGA GTCCAATGTG CTAAGTAGAA
  R
  GAATATACTC CCTCAGTTAC TTCCTTTCTA TACGTTCCTC AAGCATCCGC TAGGGATGAC
  TTTGTTTGCT CTTCTGGGTC TTGGCCAATG CATTCAACTT CCCTTTTTCC TATTTAGATA
  CAAGTAAAAG AGTCTGCAAT GGCTGTGTTC TCACGAAATC CTGAATAAGC AAGCAAAGCA
  TGATGATATC AGGGACAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss47347174	NES11362388	PERLEGEN	MM_PANEL2	f	SNP	G	G		A	A
ss324223076	CHEV_13_5725362	CHEVERUD	SCREENING_POP	f	SNP			A			G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs33800613					SNP	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47347174	NES11362388	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5776115 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	1471 bp upstream
Gm57599	predicted gene, 57599	502 bp downstream
Rr387902	regulatory region 387902	1409 bp downstream
Rr474522	regulatory region 474522	1403 bp distal
Tssr121308	transcription start site region 121308	1658 bp upstream