rs33801465 SNP Detail

Summary

• ID
  rs33801465
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:139680597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTATGCTGA AGTGACCTCT AACCACATTA TTTTCATTAC
  TATTTTATAA CTGTAATTTT GTACTGTTAC AAATTGTTAC ATAAATATCT TTGGTTTTTT
  Y
  ATCTGCCTTC AAAGTCCCCT GCTTAGGACA AGAGTACTCA AGGGGTCCTG CTCAGACCAA
  ACGGCTCCTT TGGAGAATAG GTGTGTCCCC TGCCAGGCAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47346186	NES11522777	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33801465					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47346186	NES11522777	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:139680597 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19895	CpG island 19895	1406 bp proximal
Fuom	fucose mutarotase	within coordinates
Rr166902	regulatory region 166902	803 bp proximal
Tssr75501	transcription start site region 75501	1320 bp downstream
Tssr75502	transcription start site region 75502	1642 bp downstream
Tssr75503	transcription start site region 75503	1683 bp downstream
Tssr75504	transcription start site region 75504	1700 bp downstream