rs33801468 SNP Detail

Summary

• ID
  rs33801468
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:139682151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCGGTAG CCTGGGAAGT
  CATGTGGGAC GTCTGGGAAT TACCCCGCCG CTGAACTTGG ACCTGGTTTG CCCTTCTTGT
  AGTTCTATGA CCTGGTCCAA TCTCAGGCCT CAGCTCAGCT CTTTCCTCAA GCAGCTGAAT
  AGCTTCCTGC TCCGAAGGGC AAGATGATTG CGGCAGTGTC CACAGTCTTT CCTGAACGCT
  R
  CCAGTTAAGG GCTCCTACGA GGATCGCACC CCTGTCAGAG GGCCGCGCTG CCAGCTTTTC
  GTGCTCACCA ATTTCGTCTC CATGCCCCAT CCGCGCAAGC GCGAACAACA GCTCAGGAGA
  CAGCACCTTC GGGATGCCCT TGAGCGCAAC CATGGCCGCA GGATTGGTAG GGGGCGGGTG
  TTGTCATCCG GGCGGTGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47346189	NES11522703	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33801468					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47346189	NES11522703	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:139682151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19895	CpG island 19895	within coordinates
Fuom	fucose mutarotase	within coordinates
Rr154614	regulatory region 154614	1050 bp proximal
Rr166902	regulatory region 166902	within coordinates
Tssr75501	transcription start site region 75501	217 bp upstream
Tssr75502	transcription start site region 75502	88 bp downstream
Tssr75503	transcription start site region 75503	129 bp downstream
Tssr75504	transcription start site region 75504	146 bp downstream