rs33801479 SNP Detail

Summary

• ID
  rs33801479
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5776467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGAAATCC TGAATAAGCA
  AGCAAAGCAT GATGATATCA GGGACAGGGT CTATACAAAC TGACACCATG CCATGTCACG
  TCTCAGAATA ATGATTTCAA ACATCTCCTA TAAACAAATA ACAGCACTAA GATGGATACT
  AATTTCCCAT GACCTTTAAA AATAACAACT TCTCAACTTC TGGGGCCTGA TCATCTTCTA
  Y
  TTGTTTCAGT AAAAATGGGA AGCAGCTTTG TGTAAATATA AGGATACACT TGTGAGTCAT
  GATGGCCAGT CACAAGTGTC CTATCCATCT CTCCATAGTT AAATATCTAT AAATCCACCT
  ATGACCCACG GTGAAGAAAT ATTAGCCCTG CAAGTGGTCA GAACTGGCAA GAAAGTATGA
  AATATCTTTG CCTGAGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss47347180	NES11362390	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C	T
ss324223078	CHEV_13_5725714	CHEVERUD	SCREENING_POP	f	SNP						T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs33801479					SNP	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47347180	NES11362390	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5776467 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	1823 bp upstream
Gm57599	predicted gene, 57599	854 bp downstream
Rr387902	regulatory region 387902	1761 bp downstream
Rr474522	regulatory region 474522	1755 bp distal