rs33801939 SNP Detail

Summary

• ID
  rs33801939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30576430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAGCGGC CCAGAGGAGT
  ACTTGGAAGC CTGAGGCTCC CAGCCTGTTG CTCTGGGCTT CAGGCCCTGC AGTGAAAGAG
  TGCTGAACCC TGAAAGCTGC ACTCCTGCAT TACTTCCTTC TTCCATTAAA GGCATTCCTG
  TAGCAGATGC CACCTTCTTC AGAGACTGAC AGACTTCTAG ATTCTGCTAG TTCTTGGGTG
  Y
  CCCAGGTCCC AGGTGACAGG GCACTGTGGT ATCCAAGTAT CTGCCCACAA ACAGGGTATA
  CGGTCTTGCT TTTACCTTCA GTCTTCTAAC CAACAGTCAA GCTCAGGATG CTCAGCCCAG
  CATCCACAAT CCACTCTGAG CAGATGGACA TGGTCTTTCT TTAGCTCCCC TGAGTTCAGA
  CATGGCTCTT ACTCAGTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48361347	NES12236119	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	T	C		C
ss325355807	CHEV_17_30494401	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33801939					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48361347	NES12236119	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30576430 () rs orientation: forward

Symbol	Name	Function Class
Btbd9	BTB domain containing 9	within coordinates
D17Mit60	DNA segment, Chr 17, Massachusetts Institute of Technology 60	1224 bp distal