rs33802374 SNP Detail

Summary

• ID
  rs33802374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:139682461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCAGGAG ACAGCACCTT
  CGGGATGCCC TTGAGCGCAA CCATGGCCGC AGGATTGGTA GGGGGCGGGT GTTGTCATCC
  GGGCGGTGCC ACATGGATTG GGGCGGGGCC AGAGGAGAGG CGGGCCCAAC AGCTGGGTAA
  CTGGGGTGAC ATGCAAAACT CTGAAGCCAG GCAGATTGCG GGAAAGTTCA GAAAATAAGT
  Y
  TGTGTGGGAA GCAGAAAAAT GCCTTAAGAA GCATCCGTGA AAACTGGTCA GGCACAGCCT
  TAGCCCAATG ATCTCTGATG CCCCAATCCA GATGGCTCTG GTATGGCTGG CCACTGCTGT
  CCAGCTTGGT GGCAGTGATA GGTAAAGTGT GAGAGGTAAG GGGAGGGCTT TCTGCTTCGG
  TTGTGAATGC CTTCAAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47346195	NES11522708	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33802374					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47346195	NES11522708	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:139682461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19895	CpG island 19895	68 bp distal
Fuom	fucose mutarotase	107 bp upstream
Rr154614	regulatory region 154614	740 bp proximal
Rr166902	regulatory region 166902	within coordinates
Tssr75501	transcription start site region 75501	527 bp upstream
Tssr75502	transcription start site region 75502	191 bp upstream
Tssr75503	transcription start site region 75503	170 bp upstream
Tssr75504	transcription start site region 75504	120 bp upstream