rs33802380 SNP Detail

Summary

• ID
  rs33802380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:139682564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCC CCAATCCAGA TGGCTCTGGT
  R
  TGGCTGGCCA CTGCTGTCCA GCTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47346201	NES11522711	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G		G	A		A
ss322470000	CHEV_7_147288550	CHEVERUD	SCREENING_POP	f	SNP									A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33802380					SNP	A	A	A	A	A	A	A	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47346201	NES11522711	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:139682564 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19895	CpG island 19895	171 bp distal
Fuom	fucose mutarotase	210 bp upstream
Rr154614	regulatory region 154614	637 bp proximal
Rr166902	regulatory region 166902	within coordinates
Tssr75501	transcription start site region 75501	630 bp upstream
Tssr75502	transcription start site region 75502	294 bp upstream
Tssr75503	transcription start site region 75503	273 bp upstream
Tssr75504	transcription start site region 75504	223 bp upstream