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rs33804397 SNP Detail
Summary
  • ID
    rs33804397
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr17:30573615 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAACCTTTCA GCCAATTACT
    GATTTCCATA AATGAATCAC AGCCTAGAAT TCAGGAATGT GAGGACAGGC AATTTCAAAG
    CACTACCGGA GACTATTAAT AACCAGGTAA CCCAAGCTGT GTCCAGGACT TGGCTAAACT
    GTAACGAGTT CAACGCCAAA GCTCATGCTG AATGGCTCTT AAACACTTGA TAGTCACCGC
    R
    AGTTTAAAAA GCATAGCTAA CATCTACTGA ACATTATTCT ATACCAGCCT TATGTTTCCT
    TACCCTCTCA ACTCACAGGC AGTTCCTATC ACCATTCTCT GTTTTAGATG GGCAAACCAT
    GAGGTCTAAC TTGTCTCAGC TCAGTCACAG GCTTGCGAGT AGAAAGCTAC ATTGTATGCT
    CAGCAGAACA GCAATTGTCT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss48361370 NES12236168 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G A A G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33804397 SNP G G G G G G A G G A A G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss48361370 NES12236168 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:30573615 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Btbd9 BTB domain containing 9 Intron
Noncoding-Transcript-Variant
D17Mit60 DNA segment, Chr 17, Massachusetts Institute of Technology 60 1481 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory