rs33804437 SNP Detail

Summary

• ID
  rs33804437
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:139783601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCGGCT ACTCTGTTGT
  CCATCCCATA GTGGCCCCTG GAGTAAGAAT GCAAGATGAG CTCCTGGGCA GGTGGCCTTT
  CAGCCATTCC TAGGCTTACC AGGTACTCTT TTTTTCTGCC TCAAGAATTT TGTGCCTCCA
  GCCTATCCCA GCACGCTGCT CAGTGCCTGA GCAAGGAGGG GCATTGGTGT GCAGTTCTCC
  K
  TCTAGAGACC ACAGATGCAG CAGAGTTCCA GGAACTGAGC TCACACTGCC CCTCTTTTCT
  TGGGCTGTAA CTTTGAACAG GACATCTCTT ACCCACAAGC CCTGGACTCT TCTGTCAACC
  AGGTTTATGG CAGGACTCCC ACTGGCTACC CGGACAAGCC ATAGCAGACA CGGTCCCTGC
  CTCATCTCCT CAAGGATGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss47347299	NES11551397	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs33804437					SNP	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47347299	NES11551397	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:139783601 () rs orientation: forward

Symbol	Name	Function Class
D7Mit167	DNA segment, Chr 7, Massachusetts Institute of Technology 167	1177 bp proximal
Or6b13	olfactory receptor family 6 subfamily B member 13	within coordinates
Tssr2445	transcription start site region 2445	3 bp downstream
Tssr69800	transcription start site region 69800	3 bp upstream
Tssr69801	transcription start site region 69801	36 bp upstream
Tssr69802	transcription start site region 69802	90 bp upstream
Tssr69803	transcription start site region 69803	135 bp upstream