rs33804440 SNP Detail

Summary

• ID
  rs33804440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:139783686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCTAGGC TTACCAGGTA
  CTCTTTTTTT CTGCCTCAAG AATTTTGTGC CTCCAGCCTA TCCCAGCACG CTGCTCAGTG
  CCTGAGCAAG GAGGGGCATT GGTGTGCAGT TCTCCTTCTA GAGACCACAG ATGCAGCAGA
  GTTCCAGGAA CTGAGCTCAC ACTGCCCCTC TTTTCTTGGG CTGTAACTTT GAACAGGACA
  Y
  CTCTTACCCA CAAGCCCTGG ACTCTTCTGT CAACCAGGTT TATGGCAGGA CTCCCACTGG
  CTACCCGGAC AAGCCATAGC AGACACGGTC CCTGCCTCAT CTCCTCAAGG ATGGGTGGAA
  GGCATGCTCT AAGAACAGGG AACCTGACAG GTTACCTGCC CTGATGGCTC CAGGGAGCAG
  AGAAGGTTTA TGGCTCTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47347302	NES11551398	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs33804440					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47347302	NES11551398	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:139783686 () rs orientation: forward

Symbol	Name	Function Class
D7Mit167	DNA segment, Chr 7, Massachusetts Institute of Technology 167	1092 bp proximal
Or6b13	olfactory receptor family 6 subfamily B member 13	within coordinates
Tssr2445	transcription start site region 2445	88 bp downstream
Tssr69800	transcription start site region 69800	58 bp downstream
Tssr69801	transcription start site region 69801	37 bp downstream
Tssr69802	transcription start site region 69802	5 bp upstream
Tssr69803	transcription start site region 69803	50 bp upstream