rs33804900 SNP Detail

Summary

• ID
  rs33804900
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30326002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAGTAGG ACTTTTATTA
  ATGAAAAAGT TGGGAATAAA TGAACTCCAT TTCAGAAACA TGGCTGAAAC GTATCTGAAT
  GATGGGTATG TAATGTGTCA TAGTTTAGAA ACATGTAAAA TCATGCTATT TGTGGCTGCC
  CATCCATGGA TGCTTAATAT AAGAGATAGG TATGAGCAGA CATTAAAATG CAGGTCTTGA
  W
  GCAGGATTTC AGAATAGTAG TTATGCTGAG ATAAGAAGGG GGTTGGCCTG AAGGAGCGGA
  CACAGAGCCT TAGGCTGACC TGCAGGCTGA CTGCTTATAT ATAAACTCAG AAGCAGATAG
  AGTGAGGCAC TGAGACTGAC ACACAGCTGG GTGGTAGGTG CAGATGCAGT GCTATCCACT
  GTACACCTTT TAAAGAGTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48362152	NES12220241	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33804900					SNP	A	A	A	A	A	A	A	A	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48362152	NES12220241	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30326002 () rs orientation: forward

Symbol	Name	Function Class
Gm53994	predicted gene, 53994	1188 bp upstream
Rr525166	regulatory region 525166	1374 bp distal
Rr525167	regulatory region 525167	1462 bp distal
Zfand3	zinc finger, AN1-type domain 3	within coordinates