rs33804902 SNP Detail

Summary

• ID
  rs33804902
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30325689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATAGTTT CTGTTTTAAA
  CGAAGCACCT ATTAATTAAA CACTTATGAA AACGTGCCTA GCCTCATTAC TAATCACGGA
  AATGTGAGCT GAAACAGAAC TTTGATAATG TCACACTGTT ATATTGACAG AAGTTAAACT
  GTCTGGTAGT AGCAGAACTG AGTGGGCTCT GCTGCTAGGG TGAGAATTGA TGAGTCCTCC
  S
  ATGAGCAGTG TGATAGGGTT TGGTAAGGGA ACACTGGTTT TGTTTGGCCT AGTGTTTCTA
  ACTGCATACC TCAGAAATGC TCACACACAT AAGACCAGTG TAAGAGTATT CATGGAAGTA
  GGACTTTTAT TAATGAAAAA GTTGGGAATA AATGAACTCC ATTTCAGAAA CATGGCTGAA
  ACGTATCTGA ATGATGGGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48362154	NES12220237	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33804902					SNP	C	C	C	C	C	C	C	C	G	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48362154	NES12220237	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30325689 () rs orientation: forward

Symbol	Name	Function Class
Gm53994	predicted gene, 53994	1501 bp upstream
Rr525166	regulatory region 525166	1061 bp distal
Rr525167	regulatory region 525167	1149 bp distal
Zfand3	zinc finger, AN1-type domain 3	within coordinates