rs33805139 SNP Detail

Summary

• ID
  rs33805139
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5772008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGTGGAG TTATAGACAG
  TGGTTTGCTG CTATATGGGT GCTAGAAATT GAACTCGGAT CCTATGCAAG AGCACCCAGT
  ACTTTTAAAC ATAGAGCCAT CTTTTGCTCC ATGCTCTGTG CTATGTAAAT GTAACATAGT
  TTTAATTGTT AAAAGTGTCA ACTGAAGTTA TATTGGTACA ATCAAAAACC ATTTTTATCT
  K
  TATCTCTATA TTAAAAACAC AAAACCAAGA AGATGTAAAA ATAACTATGT TATGATCTAT
  TCTGGACTTT GTTCAATAGA TAATCATATA GAGTTTATTT CACTTTGCAT ATTTTGTATA
  GTTCTCAAAG TTTTATGCTA TTATTCTAAC ACCGTTTCTT TACCCCTCTA TTTCTAGACA
  AGTATCACTA TTATTTCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47347120	NES11355850	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G		T	T	G		T
ss324223045	CHEV_13_5721255	CHEVERUD	SCREENING_POP	f	SNP						G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33805139					SNP	T	T	T	T	G	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47347120	NES11355850	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5772008 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	within coordinates
Rr387902	regulatory region 387902	1842 bp upstream
Rr474521	regulatory region 474521	1479 bp proximal