rs33805142 SNP Detail

Summary

• ID
  rs33805142
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5772453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAAAAA ACAAAAAACA
  AGAAACAAGA AACAAGAAAC AAAAAAACAA AAAAACAAAA AACAAAAAAA ACAAAAAACA
  AAAAACAAAA ACAAAAAACA AACTTAGATG TTTTGTGTTG ATGGAGATAT TTTTGGCATC
  ATCAGCCTAG AGATGTGATG AGTAAGACAT ACAGACTCCC AGTTTGCAGT GTAACTGTGC
  M
  AGTCCTGTTG ATAACAAGAA TCACAGCAAG CTTAAATCAT GCCAGTGGGC TTCTTATCAT
  TGAGAAGTCA TATAGTTTGA GGTCAAGTAC ACCCAAGCAT ATACCCATCA TTGTGGTCAT
  CTACCTACCA CTTGGCAACC TGAAGCACAC TGAGCCAGGC CTCGACTTTG TTGCCACTAA
  GGAGATTATC TAGGGTGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47347123	NES11355761	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C		C	A	C		A
ss324223048	CHEV_13_5721700	CHEVERUD	SCREENING_POP	f	SNP								C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33805142					SNP	A	A	A	A	A	A	C	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47347123	NES11355761	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5772453 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	within coordinates
Rr387902	regulatory region 387902	1397 bp upstream
Rr474521	regulatory region 474521	1034 bp proximal
Rr474522	regulatory region 474522	1968 bp proximal
Tssr121308	transcription start site region 121308	1985 bp downstream