rs33805391 SNP Detail

Summary

• ID
  rs33805391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:139784142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCTGGT TATCTGGAAA
  GACATTGGAA GATCAGGTAT GGTGGCCTGG GCAGGTCTTA TTAGACTGGG GCTATGGTAC
  AGAGACCCTT CTTTTGCATA GCTGGATCAT TGATACTGCT GTCTCTAAGC GACCTATCTA
  GGAACTGAGT TAGGTAAATC TTTCCCTGAT GCAGCTCCTG TGACCCACAA CTGCCTTCTG
  Y
  TTAGATCTGT TGCCCATTAG CTGTGTGCAT GAGACAAATA TCCTCTTTTC CAGCTGTTTT
  TTTCTCTGAA AGGAGTAGCT GTCGCATGGT CCAAGCACCT GACTCAGACA AGTGGGGACA
  AAATGGGTGG TGCTGGGGAC CCAGGGCTGC TGAACCTGGA GCACTAGAGC CTGGACTAGA
  GTCCTGTTCT CGATTTGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47347314	NES11551403	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33805391					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47347314	NES11551403	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:139784142 () rs orientation: forward

Symbol	Name	Function Class
D7Mit167	DNA segment, Chr 7, Massachusetts Institute of Technology 167	636 bp proximal
Or6b13	olfactory receptor family 6 subfamily B member 13	within coordinates
Tssr2445	transcription start site region 2445	544 bp downstream
Tssr69800	transcription start site region 69800	514 bp downstream
Tssr69801	transcription start site region 69801	493 bp downstream
Tssr69802	transcription start site region 69802	441 bp downstream
Tssr69803	transcription start site region 69803	380 bp downstream