rs33806244 SNP Detail

Summary

• ID
  rs33806244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30385250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACACAGGGA GCAAGCTTGC ACATACAGAT TTTTACAGGT
  CCCTTGCCTT TTAAATATGT TAAACACATA CAGTTGTTTT ATTGAAATAG GTTCATTCTT
  Y
  GTGGGTTTTT TTAAAATTCA TTTTTAAGTT CCATCTGAGA AGGAACCAGA AAGATAGCTC
  GGCTGTCTCA TTGTCATCCC TAGGACACCC TAGGACGTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48361967	NES12218176	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33806244					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48361967	NES12218176	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30385250 () rs orientation: forward

Symbol	Name	Function Class
C130068B02Rik	RIKEN cDNA C130068B02 gene	1511 bp downstream
Gm50226	predicted gene, 50226	within coordinates
Rr341156	regulatory region 341156	51 bp distal
Rr341157	regulatory region 341157	1951 bp proximal
Zfand3	zinc finger, AN1-type domain 3	within coordinates