rs33808529 SNP Detail

Summary

• ID
  rs33808529
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51633612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAACAAC AGAAGGCCTT
  GCTGGCTGCC CAGCCATCAG CTTTGGCTGC CAATATCGCC ATAGATGCTG TTAGGCTTGT
  TCTAGAGCTG AGCAACGACT GGGCCTTCTC CATGCCAATC ACATTCAGCT CAGGCTGTCA
  TCAAGCTTTT AGACCTTAAC ACTCCGGGAA GACCTCGTTT GCCCAATATT ACCTTGGCTA
  S
  CCAAAAGAAG TCTCAACACA CGGTCGTGTT GAGGATTAGT TTCGGGTTCT TCTGGAAATG
  TTCCCAGCTC TCCCTCTCCC CTGCTACAGA GACCAACCAA TACTGTCTGC CTCTTTTCTT
  CTGTCCTCTC AGTTAGCCAA CAAGCTGGGG AGCTGTAGGG AATTGTCACA CTGTGATCTC
  TGCTTTCTTC AGGCTAAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47350229	NES11070386	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33808529					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350229	NES11070386	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51633612 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	272 bp downstream
Rr410724	regulatory region 410724	within coordinates
Tssr6634	transcription start site region 6634	455 bp downstream
Tssr6635	transcription start site region 6635	269 bp downstream
Tssr6636	transcription start site region 6636	202 bp downstream