rs33808535 SNP Detail

Summary

• ID
  rs33808535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141940330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGAAACC TACATGCCCT
  ACCACCACAG ACTCAAGGCC CTTATATGCT CCCTGCAGCC CTGATGCAGA CAACTAAATA
  GGGGACGCCA CCATTAGATA GCAGAGGGAG AGGGGTCCCT GCCCTGCCCT CCAGGTCACC
  TCTCCACCAC CACCCCACCC CCCACCCCCA GTTTGCTCCT GTTCCCAAGG AGAGCTGATC
  Y
  GTAATCACTT GTTGAAACTT CTCTGCCCAG GGATTTGTAG CCAAGGTCAC AGCTGACCTT
  TCCTGGCATG CACAGTGCAT GCTCTGAGAG ACATAGGAGT CTTGCCTAAG AGTAGTGGGC
  TGGAAGAGGC AGGCTTCTGG CCTGGGGCTT AGGGGAGGCA CACACCCTGC AAAGGTCAGG
  AAACATGCCA ACAAGCCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47350125	NES11533217	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33808535					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350125	NES11533217	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141940330 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	840 bp proximal
Ctsd	cathepsin D	within coordinates
Rr381604	regulatory region 381604	within coordinates
Rr658152	regulatory region 658152	1910 bp distal
Rr658153	regulatory region 658153	within coordinates
Rr658154	regulatory region 658154	1239 bp proximal
Rr658155	regulatory region 658155	1254 bp proximal
Tssr70145	transcription start site region 70145	1104 bp downstream
Tssr70146	transcription start site region 70146	1083 bp downstream
Tssr70147	transcription start site region 70147	407 bp upstream
Tssr70148	transcription start site region 70148	1577 bp upstream
Tssr70149	transcription start site region 70149	1633 bp upstream
Tssr75787	transcription start site region 75787	1004 bp upstream
Tssr75788	transcription start site region 75788	982 bp upstream
Tssr75789	transcription start site region 75789	962 bp upstream
Tssr75790	transcription start site region 75790	692 bp upstream
Tssr75791	transcription start site region 75791	669 bp upstream
Tssr75792	transcription start site region 75792	656 bp upstream
Tssr75793	transcription start site region 75793	78 bp downstream
Tssr75794	transcription start site region 75794	232 bp downstream
Tssr75795	transcription start site region 75795	256 bp downstream
Tssr75796	transcription start site region 75796	1227 bp downstream
Tssr75797	transcription start site region 75797	1260 bp downstream
Tssr75798	transcription start site region 75798	1302 bp downstream
Tssr75799	transcription start site region 75799	1326 bp downstream