rs33808538 SNP Detail

Summary

• ID
  rs33808538
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141940791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGAAGA GAAGCCTGAG
  GGCAGGGCAG GCAAGCCCAG GGCAGGATCA AGCCTAGGCC ACTCCCTACA ATGGCTCCAC
  TGAGGCTACC CACCCACAGC TTGCAGCCTA CAGACTGGGC TCCTTCCCAC CCAACCCTGG
  TGCCCAGCCG GCAGAGCCAG CTCTACTCCC GCAGCCTACG GCCTCAGCCA CCTGCCACGA
  M
  CAGGGACTCA CAGAGTGGGA AAACACACGG GCTACCACCA AGACCTCATC TAGCACAAAG
  GCCAAGTCCA CGGGCCTGAG AAGGGCCTGG TCCCCAGTGG GGTAGACCTC AGCTCCAAGG
  TATTTGAACT GGGCCACTCC ATACCTTCTC TCTCTGGGAC TTGTGCAACT CAGGAGGGAG
  GAGGAGAGAT TCACCACCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47350128	NES11533218	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33808538					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350128	NES11533218	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141940791 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	379 bp proximal
Ctsd	cathepsin D	within coordinates
Rr381604	regulatory region 381604	within coordinates
Rr658153	regulatory region 658153	within coordinates
Rr658154	regulatory region 658154	778 bp proximal
Rr658155	regulatory region 658155	793 bp proximal
Tssr70145	transcription start site region 70145	1565 bp downstream
Tssr70146	transcription start site region 70146	1544 bp downstream
Tssr70147	transcription start site region 70147	43 bp downstream
Tssr70148	transcription start site region 70148	1116 bp upstream
Tssr70149	transcription start site region 70149	1172 bp upstream
Tssr75787	transcription start site region 75787	1465 bp upstream
Tssr75788	transcription start site region 75788	1443 bp upstream
Tssr75789	transcription start site region 75789	1423 bp upstream
Tssr75790	transcription start site region 75790	1153 bp upstream
Tssr75791	transcription start site region 75791	1130 bp upstream
Tssr75792	transcription start site region 75792	1117 bp upstream
Tssr75793	transcription start site region 75793	371 bp upstream
Tssr75794	transcription start site region 75794	206 bp upstream
Tssr75795	transcription start site region 75795	175 bp upstream
Tssr75796	transcription start site region 75796	766 bp downstream
Tssr75797	transcription start site region 75797	799 bp downstream
Tssr75798	transcription start site region 75798	841 bp downstream
Tssr75799	transcription start site region 75799	865 bp downstream