rs33808541 SNP Detail

Summary

• ID
  rs33808541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141940834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATCAAGC CTAGGCCACT
  CCCTACAATG GCTCCACTGA GGCTACCCAC CCACAGCTTG CAGCCTACAG ACTGGGCTCC
  TTCCCACCCA ACCCTGGTGC CCAGCCGGCA GAGCCAGCTC TACTCCCGCA GCCTACGGCC
  TCAGCCACCT GCCACGACCA GGGACTCACA GAGTGGGAAA ACACACGGGC TACCACCAAG
  R
  CCTCATCTAG CACAAAGGCC AAGTCCACGG GCCTGAGAAG GGCCTGGTCC CCAGTGGGGT
  AGACCTCAGC TCCAAGGTAT TTGAACTGGG CCACTCCATA CCTTCTCTCT CTGGGACTTG
  TGCAACTCAG GAGGGAGGAG GAGAGATTCA CCACCCAGGA CAGGGGGGAT CATCTTTGAG
  TAAACTTCTA GGGCTATGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47350131	NES11533219	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33808541					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350131	NES11533219	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141940834 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	336 bp proximal
Ctsd	cathepsin D	within coordinates
Rr381604	regulatory region 381604	within coordinates
Rr658153	regulatory region 658153	within coordinates
Rr658154	regulatory region 658154	735 bp proximal
Rr658155	regulatory region 658155	750 bp proximal
Tssr70145	transcription start site region 70145	1608 bp downstream
Tssr70146	transcription start site region 70146	1587 bp downstream
Tssr70147	transcription start site region 70147	86 bp downstream
Tssr70148	transcription start site region 70148	1073 bp upstream
Tssr70149	transcription start site region 70149	1129 bp upstream
Tssr75787	transcription start site region 75787	1508 bp upstream
Tssr75788	transcription start site region 75788	1486 bp upstream
Tssr75789	transcription start site region 75789	1466 bp upstream
Tssr75790	transcription start site region 75790	1196 bp upstream
Tssr75791	transcription start site region 75791	1173 bp upstream
Tssr75792	transcription start site region 75792	1160 bp upstream
Tssr75793	transcription start site region 75793	414 bp upstream
Tssr75794	transcription start site region 75794	249 bp upstream
Tssr75795	transcription start site region 75795	218 bp upstream
Tssr75796	transcription start site region 75796	723 bp downstream
Tssr75797	transcription start site region 75797	756 bp downstream
Tssr75798	transcription start site region 75798	798 bp downstream
Tssr75799	transcription start site region 75799	822 bp downstream