rs33808662 SNP Detail

Summary

• ID
  rs33808662
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51547871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTCAGTC CTTTGGAGAG
  CATCTTACTG TCAGTCAGAA TCTACTGTGT CACTGGAACA ATGATTAATC TGCTATCAGT
  TGGGACAATG GCAAGAAAGG TTGCATTCAG GGTTTAAGAA TAGGACAACT TAAGGAAGGT
  TAAATAAAGA GCTGTTTGCA AAGGGTGTTG GCTGTGGACA AAGTGGAAGG AATGGCAATG
  W
  ACACAGGGAT CACTGCCCAT GAAACATGTC CCACCAGACC AGAGGGAAGG CTGATGGGAC
  AGAAGCAGCC CTGTGAATAA GGCCACGGTA CGAAGATTCC CAAAAGACAG TCAGATCCAG
  GTCCAGCACA ATACACCTAC TACACACTCA AAGCCAAAAC AGTACAGAAA AAAAATTGGT
  AATTTCTAAT ACTCACTCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47348963	NES11075106	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33808662					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47348963	NES11075106	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51547871 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	793 bp downstream
Gm70899	predicted gene, 70899	within coordinates
Rr33786	regulatory region 33786	within coordinates