rs33809388 SNP Detail

Summary

• ID
  rs33809388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51633906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCAATAC TGTCTGCCTC
  TTTTCTTCTG TCCTCTCAGT TAGCCAACAA GCTGGGGAGC TGTAGGGAAT TGTCACACTG
  TGATCTCTGC TTTCTTCAGG CTAAAGAACT TTACTAGAAG CACTGGCAGA AAGTTAAATT
  GGATAAAGAT CAAAGTTGAT AAGATTCCTA GTAAGCCCAC AGTTGGTCCA CTTTAAAGGC
  R
  ACAGTCCCAT TCACTTCTGA TTAAAATGGA AATTGTCTAT AAAGAACCTC CTTGGGACAA
  AGTTGAATGA CGGAACTAGA TTAAGCAAGC AGTTCATTAC CCTTAAGTGA AAAATGAACA
  AAGTCATCAT TCAGAGGAAG TAATGGGGTC CTGATGGTAA CATGGTAATT AAAGAGACAC
  AACCTAAATT TATCCGAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47350238	NES11070389	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33809388					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350238	NES11070389	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51633906 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	566 bp downstream
Rr410724	regulatory region 410724	205 bp distal
Tssr6634	transcription start site region 6634	749 bp downstream
Tssr6635	transcription start site region 6635	563 bp downstream
Tssr6636	transcription start site region 6636	496 bp downstream