rs33809391 SNP Detail

Summary

• ID
  rs33809391
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51633916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGCCTC TTTTCTTCTG
  TCCTCTCAGT TAGCCAACAA GCTGGGGAGC TGTAGGGAAT TGTCACACTG TGATCTCTGC
  TTTCTTCAGG CTAAAGAACT TTACTAGAAG CACTGGCAGA AAGTTAAATT GGATAAAGAT
  CAAAGTTGAT AAGATTCCTA GTAAGCCCAC AGTTGGTCCA CTTTAAAGGC GACAGTCCCA
  W
  TCACTTCTGA TTAAAATGGA AATTGTCTAT AAAGAACCTC CTTGGGACAA AGTTGAATGA
  CGGAACTAGA TTAAGCAAGC AGTTCATTAC CCTTAAGTGA AAAATGAACA AAGTCATCAT
  TCAGAGGAAG TAATGGGGTC CTGATGGTAA CATGGTAATT AAAGAGACAC AACCTAAATT
  TATCCGAGCA GCTCTGAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47350241	NES11070390	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33809391					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350241	NES11070390	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51633916 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	576 bp downstream
Rr410724	regulatory region 410724	215 bp distal
Tssr6634	transcription start site region 6634	759 bp downstream
Tssr6635	transcription start site region 6635	573 bp downstream
Tssr6636	transcription start site region 6636	506 bp downstream