rs33809506 SNP Detail

Summary

• ID
  rs33809506
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141942251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTT GCAATCGCCA CTTGGGTCTT
  W
  ACTACTTCAC TCTTTAATGC CCTGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47350137	NES11533221	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	T	A	A		T	A	A	T		T
ss322471198	CHEV_7_149574419	CHEVERUD	SCREENING_POP	f	SNP										T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33809506					SNP	A	A	A	T	A	A	T	A	A	T	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350137	NES11533221	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141942251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	333 bp distal
Ctsd	cathepsin D	687 bp upstream
Gm73880	predicted gene, 73880	1810 bp upstream
Rr381604	regulatory region 381604	within coordinates
Rr658153	regulatory region 658153	668 bp distal
Rr658154	regulatory region 658154	661 bp distal
Rr658155	regulatory region 658155	within coordinates
Tssr70147	transcription start site region 70147	1503 bp downstream
Tssr70148	transcription start site region 70148	307 bp downstream
Tssr70149	transcription start site region 70149	275 bp downstream
Tssr70150	transcription start site region 70150	1672 bp upstream
Tssr70151	transcription start site region 70151	1748 bp upstream
Tssr70152	transcription start site region 70152	1764 bp upstream
Tssr70153	transcription start site region 70153	1781 bp upstream
Tssr75793	transcription start site region 75793	1831 bp upstream
Tssr75794	transcription start site region 75794	1666 bp upstream
Tssr75795	transcription start site region 75795	1635 bp upstream
Tssr75796	transcription start site region 75796	669 bp upstream
Tssr75797	transcription start site region 75797	629 bp upstream
Tssr75798	transcription start site region 75798	608 bp upstream
Tssr75799	transcription start site region 75799	579 bp upstream