rs33809513 SNP Detail

Summary

• ID
  rs33809513
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51631454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTAAGAGC TTGTAGCTCA
  CAATGAAGAT AACCAGAAGT AACCAGAAGT CCAGTGGGCC TAAGTGTGTA GCACAGCCTC
  CCACAGCTCT GCCCAAGGAT GCTCAAAGAA GTCTGCTTTA ATTCCATCCA CTGAGACAAA
  ACTTGCTTTC ATTCTGGGTC TTCAAAGGTA GCAAACACTG TTAAATTGCC CAGTTGACAT
  R
  TGGGAAATAC TGTCAAGAAA ATACCTAAAT TATCAAAGGG AACTAAATTT TTTGTTTGTT
  CTGACAGAGT GCATTGGAGC TGTGTTCCCC TTCTCTTGCA AATGCCCTCT TGGCTCTTGG
  TCTCTCACAA CCTTAGTCCC TTTTCATAGA TAGTTCTACA GAGTGGAAGC AGCATTCTCA
  ACGAGTAGAT GTCAGCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47350145	NES11070502	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33809513					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350145	NES11070502	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51631454 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	1703 bp upstream
Rr410724	regulatory region 410724	1511 bp proximal
Tssr6634	transcription start site region 6634	1698 bp upstream
Tssr6635	transcription start site region 6635	1875 bp upstream
Tssr6636	transcription start site region 6636	1953 bp upstream